# This file contains information on how to process reference data sets.
#
# dataset - name of data set, this label will be printed.
# type    - True Positives (TP) and False Positives (FP)
#           overlap percentages labeled as (Precision, Sensitivity) and (False Discovery Rate, Type I Error) respectively
#         - annotation
#           file is used for GENCODE annotation of frame shift and non frame shift Indels
# filter  - filter applied to variants for this particular data set
# path    - path of indexed BCF file
# 
# Please do not change order of data set.  profile_na12878 assumes this order.
#
#dataset              type              filter    path
broad.kb              TP                PASS      /net/fantasia/home/atks/ref/vt/grch38/broad.kb.snps.indels.complex.genotypes.bcf
illumina.platinum     TP                PASS      /net/fantasia/home/atks/ref/vt/grch38/chr20.NA12878.illumina.platinum.5284448variants.genotypes.bcf
gencode.v27           cds_annotation    .         /net/fantasia/home/atks/ref/vt/grch38/gencode.v27.cds.bed.gz
dust                  cplx_annotation   .         /net/fantasia/home/atks/ref/vt/grch38/mdust.bed.gz
rmsk                  repeat_annotation .         /net/fantasia/home/atks/ref/vt/grch38/rmsk.bed.gz